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Massive mdbook update

Dan Robertson requested to merge dlrobertson:update into master
  • Update to latest mdbook
    • Switch to using book.toml
    • No empty links are allowed anymore. Comment out all empty links in SUMMARY.md
  • Add theme
    • Add favicon.png

Large update. This removes a lot of the greyed out links on the sidebar. Newer mdbook versions don't allow empty links.

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